Biocorpora Support date format in reports for items of type DATE. Scaligner Sequences can be searched by name across all the database. Sequences can be searched by subsequence across all the database. Improved the similarity search: until version 3.26, only FR or CDR could be searched. Starting from this version, one can search by similarity […]
Biocorpora Added support for stoechiometry in sequences in Biocorpora MAB. When a sequence contains multiple chains, the ratio between each chain is not limited to 1:1. Updated sequence search engine to handle stoechiometry: exact search now requires equal stoechiometry for all sequence chains. Let A and B be two peptide chains. If sequence S1 contains […]
Scaligner Display alignment of sequence with the closest germlines in the Sequence Viewer.
Biocorpora Improved change tracking in registration module. All the editable fields about a registered entity are traced. Change tracking of registered entities has been improved. Unmodified fields are not listed in the change tracking report. Added more explicit error messages when a required value is missing from a form. Reviewed the management of error messages. […]
Biocorpora Added calculated properties for sequences: MW, Isoelectric point, Extinction coefficient, Theoretical absortion. Biocorpora (clones) When editing a clone sequence, it is now possible to automatically update the regions in the form before submitting the sequence. Scaligner Improved navigation between standard sequence lists and NGS experiments Scaligner (NGS) Enable sample processing from the web interface. […]
Scaligner (NGS) Added interface to load, process and visualize NGS datasets.
Biocorpora Added support for multiple data sources in reports. Until version 3.24, reports were based on a single data source, it was therefore necessary to have all the data in the same database view. A report can now contain nested reports based on multiple data sources. The main benefit is to reduce the number of […]
Scaligner Added humanness scores to the Excel export file. Fixed display issue with humanness graphs in Chrome. Bug fix in AHo numbering. Enable gap suppression in consensus sequence in the clustering module. Scaligner (NGS) Limit the number of CDR3 shown in a clonotype.
Scaligner Update for clustering module Clusters start with #1 instead of #0. Added the functionality to select all the sequences of a cluster, and send them to the alignment window Improved the Excel clustering report (title, headers, full length consensus sequence) Added tooltips for sequence selection and sorting.
Scaligner After many new functionalities have been added over the last years, Scaligner’s source code is reviewed in depth to provide a consistent and more user friendly display of the information. A new option has been added prevent fixing automatically frameshifts during the processing of sequences. When fixes are allowed (behavior until 3.23), some nucleotides […]